- AGM : Model-based Approach to Detecting Densely Overlapping Communities in Networks
- ConNIe : Inferring Networks of Diffusion and Influence
- Counseling : Counseling Conversation Analysis
- CRank : Prioritizing Network Communities
- Decagon : Graph Neural Network for Multirelational Link Prediction
- GraphWave : Learning Structural Node Embeddings
- Higher-order : Higher-order organization of complex networks
- InfoPath : Structure and Dynamics of Information Pathways in On-line Media
- LIM : Linear Influence Model
- NCP : Network Community Profile
- MAPPR : Local Higher-ordering Clustering with MAPPR method
- MAMBO : Construction and Representation of Multimodal Biomedical Networks
- NETINF : Inferring Networks of Diffusion and Influence
- NIFTY : A System for Large Scale Information Flow Tracking and Clustering
- node2vec : Scalable Feature Learning for Networks
- QUOTUS : The Structure of Political Media Coverage as Revealed by Quoting Patterns
- OhmNet : Feature Learning in Multi-Layer Tissue Networks
- Pathways : Disease Pathways in the Human Interactome
- Ringo : In-Memory Graph Exploration System
- SEISMIC : A Self-Exciting Point Process Model for Predicting Tweet Popularity
- SNAP : Stanford Network Analysis Platform
- Snap.py : SNAP for Python
- SnapVX : Network-Based Optimization Solver